NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115598_1080094

Scaffold Ga0115598_1080094


Overview

Basic Information
Taxon OID3300009583 Open in IMG/M
Scaffold IDGa0115598_1080094 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_B (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameOld Woman Creek National Estuarine Research Reserve, Ohio, USA
CoordinatesLat. (o)41.224Long. (o)-82.304Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000203Metagenome / Metatranscriptome1619Y
F045132Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0115598_10800941F045132GAGVLIHSSNRYPLGNCDSPGSETNPDYLTQPEAVSNRPALPSSLFAITDSARTLPEELVNSAFLIRCISTRLVRGLINQPDLTVPLSPGLILETVAVEFSPAVHHL
Ga0115598_10800942F000203N/AALFPMPTLGASGAAGFPTLFSTASGVSGLVAGPSSAFPPLEFE*

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