NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115597_1140139

Scaffold Ga0115597_1140139


Overview

Basic Information
Taxon OID3300009584 Open in IMG/M
Scaffold IDGa0115597_1140139 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_A (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameOld Woman Creek National Estuarine Research Reserve, Ohio, USA
CoordinatesLat. (o)41.224Long. (o)-82.304Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001233Metagenome / Metatranscriptome741Y
F035116Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0115597_11401391F001233N/ALRWLTAINRLRLNVSRIIPGNWGKGESGWLAQPLSNRIVRFGRGGRIHQFLWRCSRAVS*
Ga0115597_11401392F035116GGAGVSWPGSQAGVATTSRSELKSLTQESSGRKALDGRATRPETPLAVENSVGKLAAKAAPNASPGKRAWRTPIP

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