NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105159_1012831

Scaffold Ga0105159_1012831


Overview

Basic Information
Taxon OID3300009590 Open in IMG/M
Scaffold IDGa0105159_1012831 Open in IMG/M
Source Dataset NameHot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1873
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: California, Little Hot Creek
CoordinatesLat. (o)37.6906Long. (o)-118.8442Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074155Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0105159_10128311F074155GGCGGMACLVGLDFIRSRLTGELLEVLALSLELCLSCGGKLVSRDGEVVCSCCGLVWSVENSAFYVPFPEHESFEGGGAHFEGHWQPGNTLAFLKGLGDPALANSRGKGKALMRILAKSPNGAADLGLRARQVKSMVEWEDPPQLRRVLSRVSLLLAQIGQRENWLLADYVGNLARKIVAFKLLTGHMLKANVGDAVAAYATEKFGLKVKPQGLEADADDLELVRMLDKLKDKRNPHAKKVKLLPILEKYNPT*

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