NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115101_1278393

Scaffold Ga0115101_1278393


Overview

Basic Information
Taxon OID3300009592 Open in IMG/M
Scaffold IDGa0115101_1278393 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)858
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032292Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0115101_12783931F032292N/ARKASRLEEIKAVTETIEILTADEARDAMAGTYDFLQTGKVQRQNTRRAAAAVIRSAGLKNHDKMMALLATTVELDAFTKVKKAIDDMISTLQLQQEDEVKKNDYCKKALQENEMSTMKSEDLRDDLTAKIGSLESQIVTLSKEIADAKAAIVQAQIDLQRASQDRQVENLDFQKTIADQTITIEVLHKAMERLAQFYDTVELAQLHKQTPPVAQAEYKPNAGAGGVMSMIEKLIQDAKQLMVKSKQSENEAQAGYEALVADTNDSVDDLAKQVASKTEEVAKAKKD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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