NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115011_10002454

Scaffold Ga0115011_10002454


Overview

Basic Information
Taxon OID3300009593 Open in IMG/M
Scaffold IDGa0115011_10002454 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12880
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022999Metagenome212N
F030599Metagenome185Y
F048640Metagenome148N
F053632Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0115011_1000245415F030599AGGAMRLAIVIDLDGDIMYVPEDTKGFPNYPKPRLFDNMADAEKECAKWNTGVIVDFNTNKSVDKVSSYNDIRPFSLDERNRANERRLKNNGQ*
Ga0115011_1000245417F022999AGAAGGMMWILVWMQLITSQGVEHYQLGTFTKDTDCQEALAKAVVLVNTSAEMLACLEVDTRQ*
Ga0115011_1000245420F053632AGGAGMKLYKNSDGVWAGTQLDARKMCGKDYTSVDVPVDKPGLLKFLNLNKVGSSYTDNDKQNIEGEPDTYGKRSISWFRWSYDRMLSGQYDDAKEMLRKGLIDDREKD*
Ga0115011_1000245422F048640AGGAGMQPKGLHAHARIKYEPTRIQNQLECRLFGKTFRSVAEAARHYGLAPSTAYEYHHQRLHRETFPNRKRWNTWK*
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