NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115011_10085163

Scaffold Ga0115011_10085163


Overview

Basic Information
Taxon OID3300009593 Open in IMG/M
Scaffold IDGa0115011_10085163 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2209
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035474Metagenome / Metatranscriptome172Y
F058203Metagenome / Metatranscriptome135Y
F066132Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0115011_100851633F058203AGGAGMSCIHNESILETIYEEVLEEFPQLDEAHCEIIAKQRFEDMCQ*
Ga0115011_100851634F066132AGGAGMFTVNNKDYSHKELNTMYDFFTQEQWDVIDQALDCYAQTQKYEGIVEDTHQVRDAMYTLLRSAY*
Ga0115011_100851635F035474N/AMSKSLFSQSINLCDDYLGLEWQRGVVTSMFDTYRRENDLDPNLAIYHYGNDRFEVRTMVYDDSKGCIIGDQIDLGRFDNISDAEDCAETYLKDLLLDLGV*
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