NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115011_10145935

Scaffold Ga0115011_10145935


Overview

Basic Information
Taxon OID3300009593 Open in IMG/M
Scaffold IDGa0115011_10145935 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1713
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Diapherotrites → unclassified Diapherotrites → Candidatus Diapherotrites archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005038Metagenome / Metatranscriptome414Y
F015660Metagenome253N
F035491Metagenome172N
F053631Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0115011_101459351F005038AGGAGGMKAKDLNIYNLFSATYKKRKMFSFMGFGELSIMPKVDKPIRQVSNVYQFPIKSYYNQKRRVK*
Ga0115011_101459352F053631GGAGGMIRSIYFALCFGLALFGLFVITHINLTLGLSMFALFVVKFFLMLPQYKEE*
Ga0115011_101459353F035491AGGAGGMNLRNKATWELRAIVKALTLPVSSFLNTDEDNERLEQAQIVLYERRLKNSQPIKMEVK*
Ga0115011_101459355F015660N/AMANKSKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRAKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLSPKVYGKNDNLRVSGDKDSPLIVKWNG*
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