NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105259_1000097

Scaffold Ga0105259_1000097


Overview

Basic Information
Taxon OID3300009597 Open in IMG/M
Scaffold IDGa0105259_1000097 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12943
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8895Long. (o)-106.9086Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030919Metagenome / Metatranscriptome184Y
F081905Metagenome114Y
F094821Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0105259_10000972F030919AGGAMAAPFPPQGNQTQHTERPLKVYAEQYLEGQPLPVGVVTDYGDPPLFVDGLPRVPLSTGWVVVALTDWVISNRYRGTPIEVISHEEMTERFGTQGDAIT*
Ga0105259_10000978F094821GGCGGVFEKIALHGGAASIVWGYRPAVELRTWRIVKSEGKWILSGTIARVDKFQARQAPLLFTAPRPGGFWAWPIETIAIGETSVRAKLGPPVQ*
Ga0105259_10000979F081905AGGGGGMAIKTGRYGQVLWDPAATTPVALISLNAWTGDFSIEYEDVTCFLDVNHVYIPGLAKREGTLAGYWDSSNIEIFEAADQETPGMLKLFPNNTETTFFWSGLAYMDASIDCSLAAPKVTGSWRAAGPFPLSGGV*
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