Scaffold Ga0114900_1053895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114900_1053895

Scaffold Ga0114900_1053895

Overview

Basic Information
Taxon OID	3300009602 Open in IMG/M
Scaffold ID	Ga0114900_1053895 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1223
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.48	Long. (^o)	10.16	Alt. (m)		Depth (m)	2304
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091867	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114900_10538952	F091867	AGGGGG	VNTLTVEFQPDHRLSKNGLRQGHWRTTQPLIKRAREDAYVLGLIEAEDGWETPDRCRVSVRQYYCGKAYDWDGLATLCGPIIDGLVDAGAMPVDDDPAHVVEYTMTAERVKTR

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