NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114906_1047321

Scaffold Ga0114906_1047321


Overview

Basic Information
Taxon OID3300009605 Open in IMG/M
Scaffold IDGa0114906_1047321 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1649
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.38Long. (o)4.65Alt. (m)Depth (m)2720
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054926Metagenome139Y
F066841Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0114906_10473211F066841AGGAGMPVESVPVALRDRMITEFRQFLCEKIDFIPFEHQAAWWATTDGETLLDRVADPDEPGRLVRLPDETLERRAVAPRVTGRARVVAELGAYKSGKSAGAGIWAAAFGAVPDARVYLVGNEYDMCAPEFEYLLDALCSERGLNQRYRSLQNRPKDGRMWLELDNGARFEARSWERNESLKGKEVDAYIYCEAYQLPGIECFTSVAQNLRVRQGY
Ga0114906_10473213F054926GGGGGMKNLSTTEAEQFAQMILSGAPVREAVEYFFPEVMPEEVLGACEAAWPVQPEVLTAVRLLTGGEPWHKMTDPARLEAALKKHYNEMAYFLWSINYADCDGGSKLKADTCRQAIETKLAGMAGRESPLVQFYQDVLSRYEAQGKAN*
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