NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114906_1051703

Scaffold Ga0114906_1051703


Overview

Basic Information
Taxon OID3300009605 Open in IMG/M
Scaffold IDGa0114906_1051703 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1564
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.38Long. (o)4.65Alt. (m)Depth (m)2720
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029902Metagenome187Y
F073413Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0114906_10517031F029902AGGAGLASYRVREGSITAADSFTNLGSLYGQSTTTSVQVPAGASAIVGMIVSVSHDSATNGASTFAVQLTGDGLTEQQTMTVGSAGVDGTPASNGATNPPFKCDVAIPVTASNQISIAGAMDTDIGTAQMS
Ga0114906_10517033F073413AGGAGGMGRKPGPPKNTKVFRITPNEDIQIDDILKYWQANRGFYNVKSYTRSDVVGQAISQYWKQQKARHETDGKYCGICGNPTRRDD*
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