NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115102_10602158

Scaffold Ga0115102_10602158


Overview

Basic Information
Taxon OID3300009606 Open in IMG/M
Scaffold IDGa0115102_10602158 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4432
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y
F103296Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0115102_106021581F008747N/AMAPVDESKDKPAGRDGETDHEVIVPPFTVGVTVVIAVPLVSVNELGL*
Ga0115102_1060215810F032291AGGAVTAVGVPLIAPVEESRASPAGRDGDVDHEVTVPPVEDGVAVVMAVFFVSENELGLYEILGVTSLTTMVTVVVSLPPVLLAVIV*
Ga0115102_1060215813F103296N/AMVTVAASLPPVLVAVMVYVAEVVTAVGVPLMAPVEASKDKPAGSDGETDQEVIGPPLTVGVTVVIEVPFVNVNEFGL*
Ga0115102_106021583F032291AGGVTAVGVPLIAPVVESKDNPAGSDAETVQEVIGPPLTVGVVVVIEVPFVNVNELGLYERPDGATSLTTIVTVAVSLPPVLLAVIV*
Ga0115102_106021584F032291N/AMLGVPLIAPVDESKDKPAGREGETDHDVMVPPLTVGVAVVIAVPLVSVNELGLYVSEDGATSLTTMVTVAVSLPPVLPAVMV*
Ga0115102_106021585F008747AGGAVIAVGVPDIAPVEASKDSPAGSDGDTDQEVIVPPFTVGVTVVIAVPLVSVNELGL*
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