Scaffold Ga0123327

Basic Information
Taxon OID	3300009607 Open in IMG/M
Scaffold ID	Ga0123327_1020330 Open in IMG/M
Source Dataset Name	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009607 Open in IMG/M

Scaffold ID

Ga0123327_1020330 Open in IMG/M

Source Dataset Name

Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3261
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3261

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Ecosystem

Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location Name	Washington, USA
Coordinates	Lat. (^o)	47.6525	Long. (^o)	-122.3049	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Washington, USA

Coordinates

Lat. (^o)

47.6525

Long. (^o)

-122.3049

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015605	Metagenome / Metatranscriptome	253	N
F036594	Metagenome / Metatranscriptome	169	N
F051104	Metagenome / Metatranscriptome	144	Y
F078674	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123327_10203301	F036594	N/A	TFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNTQQEFCVYDKLEEMRKRKLETANLPNTMRFEHRLLNKQKVQNVYGFGKVEDLFRGGYAVVKEKQVESWKGSLFNFTAEELVVLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSNKTLGVLYEELRRKVCLN*
Ga0123327_10203302	F051104	AGGAG	LFELRIAEEIEKEAVLSQDLIQEGFSHAFKAGELIQEVKSMLHSEGDLEQWLEKNCSKVERQVAFNCLKLFNGETVKVEATTKEGKNQKRERG*
Ga0123327_10203306	F078674	AGGAG	MEELKKAVENRNAPFEFGGKTGTRGRVISLRVSERMEQLLEEQAQEWDMSISDTLRSILNFYFLPPLLLEAWESKVEELVELDTKQRGKNRADLNAQTQAQRIEHVLVDSEEAEEYALFIHELWEKSLKYFETLREEASTMNKIAEERLLKTAKAFRKASKKLEEAEVQQ*
Ga0123327_10203307	F015605	AGGAG	MIDTLKLMLNEYEISDDSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNEDNWNLTLKPLAGGKATGAFLQLSVPKNYYGSNFYSVGEEGTKAVLRKVEGELKEKGVHTPLNEASLSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0123327_1020330

Overview

Ecosystem & Geography

Associated Families

Sequences