Scaffold Ga0115100_10318413

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115100_10318413

Scaffold Ga0115100_10318413

Overview

Basic Information
Taxon OID	3300009608 Open in IMG/M
Scaffold ID	Ga0115100_10318413 Open in IMG/M
Source Dataset Name	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1040
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Prorocentrales → Prorocentraceae → Prorocentrum → Prorocentrum minimum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	36.7507	Long. (^o)	-122.0138	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039462	Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115100_103184131	F039462	N/A	MDPILKDAEWYEPSMYCFAVVMQDYGSTKKMYDLELLQGAYDKGTSIFGCDSWGVFSDKEGEVGPGAPLVKVEDADGDFHFAKREETGTWLNTGLHYQAWKAIGEAGVYKSASWVVKVDADAVFLPSRLVSYLSMKLVPASGIYLENCKNVKYGWFGSLEIFSAVAFETLLGSMASCKSTIDWQTGVDGGKYGPMGEDLFAQACLDANGVSRGEAFGTKLDGTCEADRPAEEKKNKKWKPTCDGENFPAYHPLMKPEDYWACWEAT

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