NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114912_1001399

Scaffold Ga0114912_1001399


Overview

Basic Information
Taxon OID3300009620 Open in IMG/M
Scaffold IDGa0114912_1001399 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10472
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.47Long. (o)11.53Alt. (m)Depth (m)3514
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053342Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0114912_100139912F053342N/ADMCAPEFDYLLEALCSERGQNQGYQSLQNRPKDGRLWLELDNGARFEARSWERSESLKGKEVDAYIYCEAYQLPGIECFTSVAQNLRVRQGYAIFPTTPDRPWVEVFHQHGHGNPDFPSWVCQCGIPAIVNPYSFDQAAMDRDEHLLTREKFSIAYLGKLGHYIGRVYDHQRGDRLLSVAESPRLWHNAERGAVRENFRLPHDWSVELGADTGTYCAAVVIGVSPDGMAYVLDEVTNYRYVANTTELDAASSIVRWSDAVRRMAALWQTRPLAWVDGNSQFKEECRHHGLHLLANKRGREARTEGARQYFQHDQIRLAPWLSIVPYELEYARWPDTATAAGKYERLKVNDHALDCVEHVLSRHPHGRAERPDPAFVPPGSIQWLGSPIRKRRPTTGIDVHLGGG*
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