Scaffold Ga0105173_1055695

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105173_1055695

Scaffold Ga0105173_1055695

Overview

Basic Information
Taxon OID	3300009622 Open in IMG/M
Scaffold ID	Ga0105173_1055695 Open in IMG/M
Source Dataset Name	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	674
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	-24.9939	Long. (^o)	-35.9974	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001712	Metagenome / Metatranscriptome	648	Y
F027534	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105173_10556951	F027534	GAGG	MTYGYDDATFTAMSGVTEVQINSGASLTAPDPAHGLLAVIPYLAELGAFTTNQSLFCAFRVQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPIDTPLSGGEHINYYGQPL
Ga0105173_10556952	F001712	N/A	ATRAQNFINSLSGRITGYNPFPKTGTVPQTISIDGIFNKWSGIGLGSWIYGMIPMKQLPHKAKAKTLGKALLSGGILGGLFSTGNPHNTNLLTTSRPTLALSSTEVSYT*

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