Scaffold Ga0116105

Basic Information
Taxon OID	3300009624 Open in IMG/M
Scaffold ID	Ga0116105_1000058 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009624 Open in IMG/M

Scaffold ID

Ga0116105_1000058 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41157
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (56.76%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

41157

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (56.76%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	.1 to .2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

.1 to .2

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038325	Metagenome / Metatranscriptome	166	Y
F038768	Metagenome / Metatranscriptome	165	N
F055038	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116105_100005822	F038768	GGCGG	MIGLLLYLLVGIGLLIFLWLLARRERAPVEGCGRQFVEARQALRTLQLGLLPENLIERIFDPEDFRYVTGVGSGDIGNLFLQERKRISLMWVRRVRCEIRNLMRFHLDYSRLHAKLSVVTEIRLALDLALLLLACRALRILLYSRGPYGARAVVGVLTAAAGRVCAASEKSLAFLNPPALESFRRSSAGDGAAI*
Ga0116105_100005823	F055038	N/A	MLSLLLWLAGLLLEFTLLVRSVQTKTFTKYIYFYAYISCVFIVSAGLYIGRSQLGFYEAWYWPTQFATLAMGCGVVLEIVRQALASYPGAERMARRASCAVFIVTFCLVEWSVASRAVWSTSAATVDLERDLRVIEALVLATILAIVFYYRVELGKNVTGMIVGFGAYVGVSLTTLALRAFLGPRFDGIWSDLQSASYFFALIVWTVALWSYSPNPKPPANGRGGRGGGGYDALVHGTRAQLESVRSNLRGAAGS*
Ga0116105_100005835	F038325	AGGA	MLRTPQYLLVIVALAIIAAHPGYAQDKNKDPRVVVELEKKSPSSDSNSKEPVSADGTPRLSPAEPFGKVCSAAGATKDGYRNFDKPVTVSDLFGAPIAVVIIRRLAAGQEKPDREELRKHIAAVLTAQTTEVSRYADWDEWVPLGIVATVQFSDRTKGVLEESAGHVCFSDYAGTVWWLRISPNTTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116105_1000058

Overview

Ecosystem & Geography

Associated Families

Sequences