NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116105_1022750

Scaffold Ga0116105_1022750


Overview

Basic Information
Taxon OID3300009624 Open in IMG/M
Scaffold IDGa0116105_1022750 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1326
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002552Metagenome / Metatranscriptome549Y
F007673Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0116105_10227501F007673GGAGGMKNRLCVSILAIVNALPIPYAVGQSKQPQQATIVDVQKQNISTPPVRPGADPDRTPLQSHYYLYNVSVRLNCDVYEVRYESELNDLPAALSANNSVPVRLMKHSMYLDFPGDSVKMRIVRHKVSQEAVCGQTASAK*
Ga0116105_10227502F002552AGTAGMFFNAGQEETEMDSNYMFLCGVMWCKFGQQDAGKELLRAAKSVDPDMSAPARAMLAKGARRLGDLQRRAQTSSRTILEGSL*
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Institute for Fundamental Biomedical Research
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