NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116125_1002290

Scaffold Ga0116125_1002290


Overview

Basic Information
Taxon OID3300009628 Open in IMG/M
Scaffold IDGa0116125_1002290 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7156
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021011Metagenome / Metatranscriptome221Y
F038576Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0116125_10022902F021011AGGVNTNRFIFVVALAVGLGGLSHALELRAQQAKPTGDAAKPGNTTAEQATKTGSLYSGMYTFLKEGELLQLTVEDAGHVTGFISRFGEGETDKGEFLDQFFKSGKIEAGKLSFTTEIVHGVGFDFKGTVERGEGKNPGDEAYFVLKGTLTETESDANKKVTSHAQEVVFKMFPRDAAPAAAGK*
Ga0116125_10022906F038576AGGGGGMAMEKLDLALSLIALSVVATLSLSCGAKSQSQDPLESVTISPATADAQDYPNGQVQFIASGYYIDPSHTVTPLIATWGTCSQFAATTAVSVSSTGLAQCASGTVGTYSVWANDPAPLGPGVYSCPASTACGGGCTIQATAQLTCP*
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