NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116112_1020164

Scaffold Ga0116112_1020164


Overview

Basic Information
Taxon OID3300009636 Open in IMG/M
Scaffold IDGa0116112_1020164 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2283
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035534Metagenome / Metatranscriptome172Y
F092534Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0116112_10201641F035534N/APLSGTSNCVTSSNGLGARYRAIGSSEEVKAVQNSGSKFPNGLDGIGYNVFSYGNVSGIANNPNYGYITLNNVDPLFESYGLQNATGLGYDPGQPASAGTLPGAANLPASCGGAFPCPENEIWAGGLSFPNLRNGTYAAWTITRVVSNGTPLKNAEALVKIAQEFAVTSVPDFVPFVKTTAGGIADPGLTLVHSHYQQYDGAGTLIGAAPVNSGKTEAGGELGGQILPSTSTTTQNVQGDQGLQVRP*
Ga0116112_10201643F092534GAGGMATLAAADKPRYPDLIYVVEDDPDVSQLIEHNLRTAGYDVSTFF
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