NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116126_1146957

Scaffold Ga0116126_1146957


Overview

Basic Information
Taxon OID3300009640 Open in IMG/M
Scaffold IDGa0116126_1146957 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001769Metagenome / Metatranscriptome637Y
F027392Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0116126_11469571F027392AGGAGGMRNGTTAPPGYVLPNRPHWQGGWNLRSVAGAAVAFVMAASAATEWLAIELNNPIEMGNPI
Ga0116126_11469572F001769N/AMKDIQDRARTLFRCGVAISDPHAPMEYSLASKKLIGRVLLNSEDERTGAFQTIFETIEGKIEIVRHDAALRGAWTRGDLQPGNIVVIDSLRGNPDQLYASTAGKDKDIVRDGKALDSILRRMRAMNLSVGESDKGWMGEFNKTLRSRMMDRTRDRGY*
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