NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116110_1017997

Scaffold Ga0116110_1017997


Overview

Basic Information
Taxon OID3300009643 Open in IMG/M
Scaffold IDGa0116110_1017997 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2773
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008672Metagenome329Y
F011724Metagenome287Y
F062368Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0116110_10179973F062368GGAGGMAVSVSLVEQFIEETLAGPFVKNAKLIVTGLTTGGNNSVPHGLNDGKGNAVTPLSVSIEPSSNNNFYEYQAADSTNIYVGVGSGTGTSCNIYVEY*
Ga0116110_10179974F011724GGAGGMSYCTVDDVCTAFPRFVRNAANSIQDSQIQGWLDDRKARIRSALYARGIDPDAMTLTTDQANFLRALNRDGGVADLVDALQGNVSLEAGEESEATARRKSFELQIAEIKQGLYDKFFSQLARTVEIEPTLGGTAGGETDRSTAQDRSENKSFSKDQVF*
Ga0116110_10179975F008672GAGMWTSYYNAGLSKQVVRQLLAVINRDIQAALDFVSGVPGSYAPFAEYDLALLPVQQFPALLLTPDTLAVEEQANFTLHQTMRLTCVITITHQDRNALAELIQDYVRAVRAVLDSLWELTPGDFLLTSLPLPSPPFPQGAVSPGLANGKLTRLFAERHTFEEIRQAAQSGFVMAASMSVIVEIE
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