NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116110_1123291

Scaffold Ga0116110_1123291


Overview

Basic Information
Taxon OID3300009643 Open in IMG/M
Scaffold IDGa0116110_1123291 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F021252Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0116110_11232911F021252AGGMADQAERVILEAEDQVTPVVDKANAGLDSFEKKAESSHGKVIRISDQTRTSVQRLIASLEKQAETYGKSGVERLITQREQLLQRYNREPQAIDAITRSYEKMIAMEEKAAREALAVK
Ga0116110_11232912F000451GGGGGMARFQTVIKHARFVYSPCTATEMQGFAQVLADAIRGRIQHGQNIYDQASAPLKPGLPGRRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDESLPGRRLTASQIAAFNNRREAQWGVSPRDRQSVLAAFQARPFVMLKAA*

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