NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116190_1018264

Scaffold Ga0116190_1018264


Overview

Basic Information
Taxon OID3300009655 Open in IMG/M
Scaffold IDGa0116190_1018264 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3629
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.65Long. (o)135.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F066897Metagenome / Metatranscriptome126Y
F082560Metagenome113N
F103496Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0116190_10182641F022008N/AMNDVEMLREALNDLSKQLQTLSEDNRASFGRIYDRLTKIETQMSEREYQFNRYEKTIENHEMRIRTVEGELGTLRDVPERLWRVSMSISKLTGMVAAAGGVGGLVATIIVKMLGE*
Ga0116190_101826410F082560AGAAGVYAVVWRAWLPFNGGVNVSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIRGRTWVVEVKVPRAKPRVPKAKRNEAPQEMQEWLAKGATMLQAKTLYDWQNAGAVALVATSIEDMEQKFKEGQI*
Ga0116190_10182642F103496AGGMPIDDKIRRLPLTKLIALCFTIFTCVLIVLDVTTLCPLTEKSADLLKWLGSTIIVGYFGKSAYEHKIDTTAGRKVG*
Ga0116190_10182643F066897GGAGGMNSRWFWLIIIAVILLGAVFLWYNHTSTQETLIKAQETIKETKQALRESQDALQKIDEITQKIQDVTRIAKEAGDERVEEIKYISDDDFLNIANEYSALMVERVE*
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