NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116179_1008400

Scaffold Ga0116179_1008400


Overview

Basic Information
Taxon OID3300009657 Open in IMG/M
Scaffold IDGa0116179_1008400 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6287
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.8Long. (o)-122.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020859Metagenome / Metatranscriptome221Y
F045597Metagenome / Metatranscriptome152Y
F093744Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0116179_10084006F020859AGGAGGMKKIIAKEVNPAHVNFSYYFDDDGLKSVGGENCAVYIVSGGRRRYGGFNMEEYKEIEEKAKAIIGGFRNVSDKWTNGYATYKEVMEDNAIPYTSRKCHLLKEWAEYANPYDTNDIAEFLTITTGEKWEVKAFTGYSQGDYCEVVYCVSRYTPERIEEIGEFWLGCGTEFCIDGYYGYYVPDTIRWREGETLRKYLADSYGCKPEELEIYLYDGEERVTKYKKMD*
Ga0116179_10084008F045597AGGGGGMRFDVNMAKPPTLISDSVGHGSRRTYAAVARVVSQGRGFMDVVAVYCHGYCDQHEEVESLDRLLSLLVVSAPVSNPRLTLAQFPEDLPAGWEDAWDAVEAAVLALPE*
Ga0116179_10084009F093744N/ARMPLRVGDRVEVSYPVDDFPGHVGIVREIKESTEFPGKTVVICYWPFLDKEIAFFEEDLDLI*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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