NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116182_1002744

Scaffold Ga0116182_1002744


Overview

Basic Information
Taxon OID3300009666 Open in IMG/M
Scaffold IDGa0116182_1002744 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16965
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (40.91%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054063Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0116182_10027447F054063N/AMVEDNKLKFTQIIMNAWLYGVESTSNLFFERPKLFYRKWGTLAIHPFIESWGELGMEFQKGLSPYNTVKMFIDALVAAHFFNPDDFEFGGDDNNFTFKAIKCPYKSHCKKLVDSKNEIACLRAITLLGSLDYNVEGESLKYKYNFDFNENAPCNVVFERFKD*
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