NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123334_1006459

Scaffold Ga0123334_1006459


Overview

Basic Information
Taxon OID3300009671 Open in IMG/M
Scaffold IDGa0123334_1006459 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10842
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031110Metagenome / Metatranscriptome183Y
F064748Metagenome / Metatranscriptome128Y
F090431Metagenome / Metatranscriptome108N
F092110Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0123334_10064591F064748AGGMKKYRFIGNMEDVTPCGNMDEECIAVGCKGKVWGQCHFDPNLNLLSSGSEYYEEVRDTVFRVEKDGAYSNGGLYPFFSDNGKLWMKASHLKKHFEQSIGYNYETKQSIPLYKEYPYNAEVVEYALVEVKRTPVKKFVEGGE*
Ga0123334_100645915F031110N/AMEFSDILKQLWHSSYSDALTDPKVHVFVGNSRHISVSPFYNSNCDMGFEDEKKLLQGKLRKINENLFKNFHLLCFTELKIVPKFKPGKIIIFNEYGDFVNEQHIRNIQKIINANPLTVFKVKTKQNVELKGNNVRMIKK*
Ga0123334_10064594F090431N/AMINMRYIYSNRNLISVDSISLMEIFQDNIVLTLNSGRKLSVFSTKKSDDLEYVFIELSKEIRRDNCNIDMIEFRLYMKIYHGIEEGTWFL*
Ga0123334_10064597F092110N/AMSCKDYIELKPGMEVKLSYEPWGYKNVDAVIDSVDVKYHYDEAHNCGVFHPVVVCYVGKYRMTFKGPINWETLVIKPCRKVYVKDLKVGDVIERGILRGFVKYVGEESATIQWFSKLGLKTFDNYYDKEIKYAEVVGHIDLWNL*

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