Basic Information | |
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Taxon OID | 3300009671 Open in IMG/M |
Scaffold ID | Ga0123334_1006459 Open in IMG/M |
Source Dataset Name | Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10842 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (72.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Washington, USA | |||||||
Coordinates | Lat. (o) | 47.6525 | Long. (o) | -122.3049 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031110 | Metagenome / Metatranscriptome | 183 | Y |
F064748 | Metagenome / Metatranscriptome | 128 | Y |
F090431 | Metagenome / Metatranscriptome | 108 | N |
F092110 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0123334_10064591 | F064748 | AGG | MKKYRFIGNMEDVTPCGNMDEECIAVGCKGKVWGQCHFDPNLNLLSSGSEYYEEVRDTVFRVEKDGAYSNGGLYPFFSDNGKLWMKASHLKKHFEQSIGYNYETKQSIPLYKEYPYNAEVVEYALVEVKRTPVKKFVEGGE* |
Ga0123334_100645915 | F031110 | N/A | MEFSDILKQLWHSSYSDALTDPKVHVFVGNSRHISVSPFYNSNCDMGFEDEKKLLQGKLRKINENLFKNFHLLCFTELKIVPKFKPGKIIIFNEYGDFVNEQHIRNIQKIINANPLTVFKVKTKQNVELKGNNVRMIKK* |
Ga0123334_10064594 | F090431 | N/A | MINMRYIYSNRNLISVDSISLMEIFQDNIVLTLNSGRKLSVFSTKKSDDLEYVFIELSKEIRRDNCNIDMIEFRLYMKIYHGIEEGTWFL* |
Ga0123334_10064597 | F092110 | N/A | MSCKDYIELKPGMEVKLSYEPWGYKNVDAVIDSVDVKYHYDEAHNCGVFHPVVVCYVGKYRMTFKGPINWETLVIKPCRKVYVKDLKVGDVIERGILRGFVKYVGEESATIQWFSKLGLKTFDNYYDKEIKYAEVVGHIDLWNL* |
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