NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115104_10344535

Scaffold Ga0115104_10344535


Overview

Basic Information
Taxon OID3300009677 Open in IMG/M
Scaffold IDGa0115104_10344535 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1028
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.1275Long. (o)-123.299Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027054Metagenome / Metatranscriptome196N
F049006Metagenome / Metatranscriptome147N
F100982Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0115104_103445352F027054N/AMTKTKKETSRHWTVELNVGSKRNMGKLRHSKTSGYRYAYHDLNHVREKIKNRFDGGSGNIVKAMFEFDGTYNDEIEKSFYIAFSFYGNIETFKDEDGIEVEHMPLSDRKILEDKLTILCMELEQECIGYNIKEWTSSTFYPTGKQDLIYHPNYEGEQMIFEDEYFMTFGYHKLSSFEKLHTV*
Ga0115104_103445353F049006N/AMTKIEFIDVCTRHGVDQWIVMDDLLLNGKQHPHDLTVNDLNEFMWSTY*
Ga0115104_103445354F100982N/AMYINFKQIDKLEKVVDSIACSNIDTDTFKCLNENQRSYLRNEIIRTLDSMLNLD*
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