Scaffold Ga0115104_10430985

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115104_10430985

Scaffold Ga0115104_10430985

Overview

Basic Information
Taxon OID	3300009677 Open in IMG/M
Scaffold ID	Ga0115104_10430985 Open in IMG/M
Source Dataset Name	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	933
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	36.1275	Long. (^o)	-123.299	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000287	Metatranscriptome	1370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115104_104309852	F000287	GAGG	MTAGGAWRRPRMKVYDYNQEFGGNYYQPMIQYINHKDIYGPFSKKADVYLPHSAEVTSAKYTNMRYNDKSSAKHNLDQFLVDAHKTQIKELNGTTAMARVNLMKNIVTSRRQPHTPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIVKGGNHKLDTKYRKHLAMIEACEDEYNYHHKLFGQGAVDRDFQFHNPQLVKDYVNQIRRV*

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