NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115104_10867916

Scaffold Ga0115104_10867916


Overview

Basic Information
Taxon OID3300009677 Open in IMG/M
Scaffold IDGa0115104_10867916 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)990
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.1275Long. (o)-123.299Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002352Metatranscriptome567Y

Sequences

Protein IDFamilyRBSSequence
Ga0115104_108679161F002352N/APKGYCHDCEVTCFEDCVVKFDREVIVPDVTGTDRLSRKDTRVEAAMKKKLHGVVLSQNGTADASKKNATLLKLTGAYKQCLKQDKCPCALDARRDAKAKKQASFLATAAGQKKCKISERPCATGCVSKTLDAPPSLVQEGVEPGPKDPDDAAIPWSINVHPVKINTFATGRQNLERCYKSCLAATCGCDDAPGMEAIDDLGSAIKANDEAKDPVEDSHPSWQYKHADIVDCGKGMQGKKITKGLYADLAGGPDGWAEVCSEDFFTKQGMPADIGQKNCNNGKALLAGCLWDENKGKCVYGLKKLIECYSRFKDDDKL*
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