NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115104_11072422

Scaffold Ga0115104_11072422


Overview

Basic Information
Taxon OID3300009677 Open in IMG/M
Scaffold IDGa0115104_11072422 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.1275Long. (o)-123.299Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013133Metagenome / Metatranscriptome274Y
F054355Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0115104_110724221F054355GGAGGMNIKSIFGNIGDVLNGIAGVLTALVSVSILSTVVFGNGWLGTDIIANIGSLVGSFLNGGVTGLLVLLILLMLWD
Ga0115104_110724222F013133N/AYGLAWGLHRPSMNWFASTPREHMITNGVGFGLNKWGVGADLFWGGDSMDDEMESELYWAGRFSYGLNLLGLDSNFGLSLNSDEAQLVDVSLGNNLFTTSLEYDLSEAADGAYWLRGVVTPPQAQGAFLLIGLNSDEVVTYGVGYKCSDKMKVVSEFTSGTDSDGNDIDNDFSIRASYSF*
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