NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105252_10000704

Scaffold Ga0105252_10000704


Overview

Basic Information
Taxon OID3300009678 Open in IMG/M
Scaffold IDGa0105252_10000704 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18804
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (72.97%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8898Long. (o)-106.9077Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055453Metagenome138Y
F071209Metagenome / Metatranscriptome122Y
F097281Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0105252_1000070417F097281N/AMNKQKTPVVTNQPVNLKEKNAAHNFRVTIRDREHFYKLVNWLNTNVGKGKDKWTMEGRVLKTLKNGKPVSPKIYIFREDFDPASSLYLSLL*
Ga0105252_100007042F055453N/AMINNDMKIKDILNESATDVVARFYKEASADSEKFYNPEDVKYKGQNREYYEKYFKQWFNEDIVPVFIKPVDKPQPEYTNHPKEGKLQSPGYRGQQYALAAADLPYDHKVQKFMTDPARLLASHVMDAARNNNGQ*
Ga0105252_100007046F071209GGAGMDKDTYVPMNELIQDKEKFWTFTHINLPYHEIARKGIVIWCVENLEGRWTMLGGNKFGFEDATDATMFRIQFGLGV*
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