Scaffold Ga0115105_11210205

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115105_11210205

Scaffold Ga0115105_11210205

Overview

Basic Information
Taxon OID	3300009679 Open in IMG/M
Scaffold ID	Ga0115105_11210205 Open in IMG/M
Source Dataset Name	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	501
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	33.2898	Long. (^o)	-129.427	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008292	Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115105_112102051	F008292	N/A	MLRTLLLALLVVSPIAGLSTEGNAAVQKVIQMLGDMSAKAKDEKNKEQVAFAEFETWCKMEIPQMKKGIAKAAETIELLNAEIAKLTTEAKVLGEEIGKLQNDVANFESEKKAATAQREKDNKAYIEESTDYGESVDALDRAIVVLMKRS

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