NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116224_10035953

Scaffold Ga0116224_10035953


Overview

Basic Information
Taxon OID3300009683 Open in IMG/M
Scaffold IDGa0116224_10035953 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2431
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014927Metagenome / Metatranscriptome259Y
F056131Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0116224_100359531F056131GGAGGMQRKVRNKLWISAASGVLIVAAGLSGCSMFSTSNVPVDCDVVKQQVKAGQTDAQIASNLSAPVDQVAACHGPETDTNKTTTIPEKGY*
Ga0116224_100359533F014927AGGAGGMAQPRSQLDRANLSAGAEKLSLLAGLTAGLAYSSFASFVANALTPVTGRLVETDSLRRNVSGHYQEVFSLDGAIPTVVASLIVFVLVWWSMRVILEHWQREDWGRIGALDRSLSGGPLLIPVIVAPLAL*
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