NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114958_10002072

Scaffold Ga0114958_10002072


Overview

Basic Information
Taxon OID3300009684 Open in IMG/M
Scaffold IDGa0114958_10002072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15283
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009524Metagenome / Metatranscriptome316Y
F015973Metagenome / Metatranscriptome250Y
F036677Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0114958_1000207212F015973GGAGVSLTVTNITIGTTATLIATGLNGPSWLYLHAPTGGNTVYVGPSNVTTATGLELPKGALQTFWLSETDKVYGIVATSTQPLMTMQTGGR*
Ga0114958_100020724F036677GGAMAAGVQFEVVADKNFDQLRLGFLKGSNPTAFKRLMSFAALNAARTLQKPMRDKAPKGETGKLRKKIIARKARFNNPAAVVGIKGGRNGVFYGWLVVGGSGTRRTTPNGTFTVKGVKGRPFVDQVVKQASNIDRAVESYSKTVAAYFNDEPFRNTILKFKRGNQR*
Ga0114958_100020727F009524AGGAGGVTDLTILDAIADQLASVNPPSGYTLRKVYATPPEGVPTTPAIVLFPGDDTITIGNGNRSTVLTVAIRLYLLPIPRMDEKYRDLYTWRAWLRTVFDGAVTISGNAVQVAVTGTTLGTDTYADQEYLTVEATAEVTVYDTVAFTA*
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Institute for Fundamental Biomedical Research
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