NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116216_10387344

Scaffold Ga0116216_10387344


Overview

Basic Information
Taxon OID3300009698 Open in IMG/M
Scaffold IDGa0116216_10387344 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039232Metagenome / Metatranscriptome164Y
F064926Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0116216_103873441F064926N/ASISSLALELRAAEEPSPRVWNSIEIALRQEKLIRPPRTNRSLIPSLSSRWGWAHWLAPAAAALLIVVGLYVRQHSLPAQLARDAARPSIATNAADVEIAGLNDDDLRQELAQQTPEIRAQYEDNLRRVNEYIQDAKDNVAADPNDEDAHRSLMEAYQEKSMLFELAMDRSLP*
Ga0116216_103873442F039232GGAMSGRTIRVAAVGAILAGTLVAQSRKEYRFNVESKAGVSVNNPFGSISVRPTLGSTVVINALLHSDKVEVDNRQNANHVEIQSHLLPGADAESGRVDYEILV
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