NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116217_10162227

Scaffold Ga0116217_10162227


Overview

Basic Information
Taxon OID3300009700 Open in IMG/M
Scaffold IDGa0116217_10162227 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1487
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102308Metagenome / Metatranscriptome101N
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0116217_101622272F102308AGGAGMCRIHSTKTKIAEAKRSSTLEILARLEDEHEILSRLAFVVTGDIGTAERSVSEARELVTNGARPLLFSEQLTQWLKWVTIEAAMINSLHEIARYEARYVNQNCTHSEHLLNGNDSKLWEFRNFLLHIDPEIVIAELDPLARAVAVLRTTARASILDCILRLKLSLDTVLAANCRAMTWFAEKRTGLSDKATTPEPKQENP*
Ga0116217_101622273F105715AGGAMLRAEFNHKNKSLTLRLEGRLVGAWAVQVKSLVSRHFVSNGLLVDMSEVTYVDSVGERLLLWLRDLHARFVGETCYARDICERLHLTLQGDADGPVPSAAEVSPS*
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