NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116217_10720096

Scaffold Ga0116217_10720096


Overview

Basic Information
Taxon OID3300009700 Open in IMG/M
Scaffold IDGa0116217_10720096 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Candidatus Methanoperedenaceae → Candidatus Methanoperedens → Candidatus Methanoperedens nitroreducens(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039798Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0116217_107200961F039798N/AAQARPLPGPDLQKIYDRLLKQIDQIPIYDNHSHATFPDDSDMDAQAAPPDESSVLRLRDSNPEFVAAARSLFGYPYDDFKPEHAKWLIDKKKAAEASGSTAYWDSILDKLNIETCLANRVALAPYLDPKRFHWVFFVDSFLFALDNRDQTGKNPDMGVYIPLQEKVLQRYLKQENLNALPADLAGYEAFIRQTVIDNKKRGGVAM
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