NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114931_10126020

Scaffold Ga0114931_10126020


Overview

Basic Information
Taxon OID3300009702 Open in IMG/M
Scaffold IDGa0114931_10126020 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV14_V59a metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2137
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5263Long. (o)25.4867Alt. (m)Depth (m)505
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072433Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0114931_101260201F072433N/AMFSKKVTINLEKKDDIFHLEPLSDIHVGHAGFNKELYQKRIKAITNSDSRYTLFLGDQFDAITTYDKRFNPDMSLIHDVDNQRKLWQKL
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