NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114933_10065240

Scaffold Ga0114933_10065240


Overview

Basic Information
Taxon OID3300009703 Open in IMG/M
Scaffold IDGa0114933_10065240 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2623
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4871Alt. (m)Depth (m)495
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042637Metagenome / Metatranscriptome158Y
F059370Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0114933_100652403F059370N/AMIDVYCVNVGTKYNRDFDKKLKESIDKHLTLEHTFTCLTDKPEKEYDKPVTHPELRGVFHKLSLFQFTGNCLFFDLDIQINDNIDFLASDFRRLTLIDSSPWKQDSLRDPLKFKITQNTLVNSSVMRWSDERKVFEKFMKHRDMYVRLYSGIDRYIYNEGIEYKYFMGNAISSWQEDVSHNTIMLHNQKYV*
Ga0114933_100652404F042637AGGAMAIFSGKIIEAYFTNSENNAVEVIYKDGEKAINYYLAVDFNNKDFKDLIAEYNTDKISESTIARNRNYAKQLSDMVDAGIKAKTDVKQRLSAEDLVKKILNFDSSDPESQEILFTLKVEIFETKRIKDSTDKELKARLRSTKTPIDLLVAYNEIND*
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Institute for Fundamental Biomedical Research
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