NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114933_10093661

Scaffold Ga0114933_10093661


Overview

Basic Information
Taxon OID3300009703 Open in IMG/M
Scaffold IDGa0114933_10093661 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4871Alt. (m)Depth (m)495
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F009812Metagenome312Y
F023621Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0114933_100936612F009812N/AMMDDEFEIEWIPEDTGAPYEVDMTQVIVDLPSHSIDKLCKKKYGHTNWARMGSMSPEELHGNPCDFDYENGVIFFKNAHMV*
Ga0114933_100936613F000720GAGGMSLIKDNTKMRKEIPNRMMSATFALPIDERRVIGIVNYVASDTGITPMAFWVKLKPTDSYLDRELRASGKLISRCMQNGESLKDLVETLSQDNVIGQMANYLHRNMEDIIMGKQLEKKQRMLSTDPYAMKE*
Ga0114933_100936614F023621GAGMDEIRRKYMSIMDRRINNVLKAMREAKPYDMKMIWNRKLQELFRIRGEKAFERLEHEARMVH*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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