Scaffold Ga0115000

Basic Information
Taxon OID	3300009705 Open in IMG/M
Scaffold ID	Ga0115000_10000492 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009705 Open in IMG/M

Scaffold ID

Ga0115000_10000492 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36574
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (40.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36574

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (40.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	77.0991	Long. (^o)	-150.2252	Alt. (m)	Depth (m)	58
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

77.0991

Long. (^o)

-150.2252

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y
F046008	Metagenome	152	Y
F054361	Metagenome	140	Y
F060349	Metagenome / Metatranscriptome	133	Y
F072850	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115000_1000049211	F005364	N/A	MDKLDLVNRIKGLVKEEVSSVLSERTYQYGGLLDPDEFDPIDPEIHIVGFGTMARSSLRKEIATRLEGALSTAKDASAGGPNSYDKYKSLEGVLEDKGVLMQQIKAEAEIANQLEQLRIKGGRRSIPIPKQF*
Ga0115000_100004922	F046008	N/A	MPKVLANVFAIAGKVVKRTYAIHGGLIPPYTMTLHGERYIMPGWYKMKRNEETPNIKDIAYYPYKAKKPNNLNIESNKVYKVKSSRGNSFYEVQLNVAGIVECSCPGYVFRRKCRHLAEFAQTSI*
Ga0115000_1000049220	F060349	N/A	MSKHQNKVLKQYPKAYAEHGMNGVRIISNDVFLAKEFYMPNTNDEDIAWEHAAMSCRLTQNFNRAHPSRMNLSDVESKLSRMHNRKRRGRRVK*
Ga0115000_1000049222	F054361	N/A	MGYVNNSAQHDEKKLKKYGKHYASIDFEINDSISEHYFENNEKPVVGKLIIGNSRFDVTYQEIDHMARTLHAAKDVINRKYKMGMMK*
Ga0115000_1000049224	F072850	AGG	MKLNELKIHEDDFDLFVALDAEDKIEFLFDATQVGLEEATIKQVGKLADRYAPITPAVSVQKYQVGPYRLCVTQYPNTIHLNSNSLRAIRKFISKLWNDGLILKQLKVAKTDFDVYRFLRVYEVIGKGQPFCNN*
Ga0115000_100004929	F007609	GAG	MITLENISTGDVINGEELEFFVDDDTAIGEVYVDGDLIFQALDVLNDHQLEHALHLEYKQVEDLEGILSEFNQF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115000_10000492

Overview

Ecosystem & Geography

Associated Families

Sequences