Scaffold Ga0116227

Basic Information
Taxon OID	3300009709 Open in IMG/M
Scaffold ID	Ga0116227_10000007 Open in IMG/M
Source Dataset Name	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009709 Open in IMG/M

Scaffold ID

Ga0116227_10000007 Open in IMG/M

Source Dataset Name

Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	385394
Total Scaffold Genes	688 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	456 (66.28%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

385394

Total Scaffold Genes

688 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

456 (66.28%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F058120	Metagenome / Metatranscriptome	135	Y
F071209	Metagenome / Metatranscriptome	122	Y
F074429	Metagenome	119	Y
F078676	Metagenome / Metatranscriptome	116	Y
F082643	Metagenome / Metatranscriptome	113	Y
F089950	Metagenome / Metatranscriptome	108	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116227_10000007126	F058120	GAGG	MTKTATEFGQELLETIKSKDAQQSIAKIQQFREGMKDTSVGAEYVLWITEPVNLTSVHKALAEDLMVPPKLLAIRRAVMSRTQKAAMLILAIENGIKRVHSL*
Ga0116227_10000007163	F089950	N/A	MASFFSEGSKLSFQGFRGTIVKITETYRKNVLVLKVSEIPRDRKWANRKIESIGIFEYPDGTLEFMTIIE*
Ga0116227_1000000731	F097281	GAG	MNKQTTPKDTPVNLKEQDAAHTFKVTIRDREHFYKIINWLNTNVGKGKDRWTSEGRILKHLKSGKPITRSIYIFRQDFDPQSALYLNLL*
Ga0116227_10000007369	F082643	AGGA	MLYPYPNFAVCTPIGTVALEANVQAVINAIKTKSVIPYGDYGGPNVYYFSTLENGLGNLVYTIFDKNTTLGLASFAVRFGAATTIKQAIFEPFPRSQIDLQYLILPNIPLHIPPAGSVIP
Ga0116227_1000000739	F071209	AGGAGG	MAKEDMYVPMNKLILDKEKTWTFTNIHIPFTDIAKKGIILWCLENLEGRWTMLGGNKFGFEDSTDAAMFKIRFGFGA*
Ga0116227_1000000743	F055453	N/A	MKIKDILTESSTDVVARFYKEAGEAYDKYYNPEDVKYKEKSAGYYEEFFKSWFNEGITPIFTKPVTKAQPEYTNIPKEGKLQSPGYRGLQYSLAAAGLPYNHEVQRYEPNASKMVATQTMDGARNNNGQ*
Ga0116227_10000007590	F074429	AGGAG	MPSKRTTSFNLDKAISRIAKPSVFDRIVKEVDAKEIPAKYIEHILVQYYDGNVVELSGSELTHPIPVNKDANWEVMEETFKKMRDIKVFINTEKLERDINELVEKYLGFHC*
Ga0116227_1000000798	F078676	AGGA	MPKQIHGAASSMQNLTADLQYYVCYASSPGAFTDPNPNPPPNQEIPRLLNIQVTGSPLDESQKNFEVLLMSIGLRAMPVVLSDPIAVLQLADYTLELSGEGYIWKFAVERGVQFYNFTPFGTAGPVGLLIDDLDGVIIPSGVRITTVQGSPSGWAQNIAFTRMDSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116227_10000007

Overview

Ecosystem & Geography

Associated Families

Sequences