NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116166_1071146

Scaffold Ga0116166_1071146


Overview

Basic Information
Taxon OID3300009711 Open in IMG/M
Scaffold IDGa0116166_1071146 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1464
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022612Metagenome / Metatranscriptome213Y
F048731Metagenome / Metatranscriptome147Y
F103107Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0116166_10711462F103107GAGMVRVTKNRIVYWIDEKTGGYVELAGTKWDGNVSDEELMVRALQEAEEVGLDLSYGKILIEEEEVN*
Ga0116166_10711463F022612AGGAGGMIRKILAYNNRYTRIRKDVARRLFKEGKTIYLTPSKVVASDSNMWIKPYPIDNQAGYDFDDIVNNYEYYNCCYELGYYTNFWITEVEE*
Ga0116166_10711464F048731N/ALPQLQKNEEVKKMVRTMEKALRYALAISEDPPRIKEHVEKYLAAAGFDRRYKFKWCAVSGNHRFTFSGIFEYAGQRYYFNRLNDLHLEKI*
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