NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123373_184646

Scaffold Ga0123373_184646


Overview

Basic Information
Taxon OID3300009732 Open in IMG/M
Scaffold IDGa0123373_184646 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_232_2m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1085
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NameLouisana Shelf, Hypoxic Zone, Gulf of Mexico
CoordinatesLat. (o)28.8679Long. (o)-90.4764Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006742Metatranscriptome365N

Sequences

Protein IDFamilyRBSSequence
Ga0123373_1846461F006742N/AMLRLVTVSLAVLAAVSASPEMMKKMHKDMMMMNSMSACWGKGNMMYFKVALKQAQEECGQHSSRPANLLKPANPFSSLLQDSNTLPFPVNDNPFQTLPSPVNNQNPFKSSNIKLNAWKNLWNRNKRQAEGLLQPTEEDFKEFLMDFDEFKGDVASMMGNLTCVLTKMDMLDSNLQVNMKAYTDDLWSKMDLSQTMAGEDPVWREMLVSEYKDCYDIARSFPQSALNKNPLMKVFGRHMVFFKCAKKVEMKCCGMACANDMLETLYGTNDQFNWAQYGLPQNKYERAAWTMKIMYGTASKEEMFVHDFFYSDPMM*
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