NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123360_1041238

Scaffold Ga0123360_1041238


Overview

Basic Information
Taxon OID3300009753 Open in IMG/M
Scaffold IDGa0123360_1041238 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_190_18m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)838
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NameLouisana Shelf, Hypoxic Zone, Gulf of Mexico
CoordinatesLat. (o)28.8679Long. (o)-90.4764Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F018550Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0123360_10412381F018550N/AGTGAARVLSWDAIAGAMKRLYDAHAPMIQPVLCVNPKQLLDLNKELLEGNVGITGAILPRDRSIAGIDIDTIVTPFGAIGLMVIDPNIMPADEAYILDFAFIQPVFTNIPGYGTVFVRDLDQDDYARVGKAVYMEMGYDFGPPSYHLKFIDADSA*
Ga0123360_10412382F003693GAGMSNKVKTVLIDVSEDASNSVGFKTEGLLLSGIKFPAAMTGSAITFDHSMDNSTWSDVKETDGTDVSYTISAGDVVRLDPSGWAFAAEGWLRITSDGTEAAD
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