Scaffold Ga0123367_1207147

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0123367_1207147

Scaffold Ga0123367_1207147

Overview

Basic Information
Taxon OID	3300009757 Open in IMG/M
Scaffold ID	Ga0123367_1207147 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_205_2m (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	691
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Louisana Shelf, Hypoxic Zone, Gulf of Mexico
Coordinates	Lat. (^o)	28.8679	Long. (^o)	-90.4764	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000287	Metatranscriptome	1370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123367_12071472	F000287	GGAG	MKVYDYNQEFGGNYYQPMIQYINKKDIYGPFMKRQEVYLPHAAEVTSDKFTNMRYQDKSSAKHNLDEFLKGAYAKQMKELNGTTAMTRVNMMKNIVTNRRQPHSPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIEKNNNKKLADKQRKHLVMLEASDDEYQYHYKLFGEGAGADRDMKFYAPQLVKDYINQIRRF*

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