Basic Information | |
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Taxon OID | 3300009764 Open in IMG/M |
Scaffold ID | Ga0116134_1005500 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5786 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | .4 to .5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006757 | Metagenome / Metatranscriptome | 365 | Y |
F049845 | Metagenome / Metatranscriptome | 146 | Y |
F073812 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116134_10055001 | F049845 | N/A | MVYQFEFDPVNKILLLRFEGRLTDTLVRTLYWEVRKHSTAIDASVGIFDLSAVTEFAVSPEMILELANRDPAMPDATKRPRIIVAPAMLGLGVSRLCEIAVEQRSPLLQIVLSLEEAFAALGVQSPHFEPLE* |
Ga0116134_100550010 | F073812 | GGAG | MADPRHELESALSPLAWILNFFWDTIRLMFWFFMSPILIITWCFHHPAEARLYAVSAIPLLWNGNVGTRGLLVFFVLLIASLFGKTLHRICWGIIRLALVAGLIWYIYMIFKLA* |
Ga0116134_10055009 | F006757 | N/A | MRDVAVLPPVKATVRAALLNLAAYKEIPTAQLIAAARALPGGTKVHCPDRLTAIVLLLGTRLVELN* |
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