NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105164_10349326

Scaffold Ga0105164_10349326


Overview

Basic Information
Taxon OID3300009777 Open in IMG/M
Scaffold IDGa0105164_10349326 Open in IMG/M
Source Dataset NameWastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)736
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameNetherlands
CoordinatesLat. (o)52.2278Long. (o)5.919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0105164_103493261F047595AGGAGMDFDIGSNQYRNAANGIEIDGMAQLSFEHNRRYNEMMLRGLIFDQRGSLVAQISENSLAMNLQGEFEMQSEYPVVKLLRRETEDVLLEVKFLDSNRVQIHKARLYSGKGKPFQVTPTLWKLKDETHSGENIDCEGKPVSLK*

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