NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116157_10051802

Scaffold Ga0116157_10051802


Overview

Basic Information
Taxon OID3300009782 Open in IMG/M
Scaffold IDGa0116157_10051802 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2684
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.12Long. (o)-87.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023356Metagenome / Metatranscriptome210Y
F048287Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0116157_100518021F023356N/ARSGMQKWYNLLTCKGVCMSENSLKKAVLKSRASAAEAEAMSTELKKSKVITLRVEEPLFKAIEAQAELWNVKPAETIRRVLRFYFLPVALELELRGESEKFWKGEFTPEAVGEYMVFLLETTEKIRSSALFLSREAVKLSEATEGKLSEALEEEREGAET*
Ga0116157_100518022F048287AGGAMYNKAVLLQTLQQVRLKVIDTLKLMLSDYEVSPESSLRVQPASYEVATGEKVEFPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGTRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELVQSGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVSNSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRSLYGFTSVSELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKVFQERFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
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